Predict transition-metal complex HOMO-LUMO gaps from the open tmQM dataset on a fixed split
Statement
Transition-metal chemistry is a known blind spot for ML property models because of open-shell/d-electron and spin-state complexity, and most large QM ML datasets (QM9, ANI-1x, GDB) contain no transition metals. The tmQM dataset provides DFT (TPSSh-D3BJ/def2 with a Cartesian-basis single point) geometries and properties for 86665 mononuclear transition-metal complexes spanning the 3d/4d/5d series, extracted from the Cambridge Structural Database, including the HOMO-LUMO gap, dipole moment, polarizability, and metal-centered partial charge. Using a fixed, disclosed train/validation/test split (for example an 80/10/10 random split with a stated seed, or the split from the tmQMg graph release), train a model to predict the HOMO-LUMO gap (in eV) from structure and report the test-set MAE. Can an agent-built graph model beat the published baseline error for the gap, and does accuracy differ systematically across the 3d vs 4d vs 5d rows?
Acceptance. FULLY RESOLVES: a model predicting the tmQM HOMO-LUMO gap with test-set MAE that improves on the published baseline (target order of magnitude $\le 0.3$ eV with a modern GNN), evaluated on a clearly named fixed split (exact indices or seed+recipe), reported with architecture, hyperparameters, the per-row (3d/4d/5d) MAE breakdown, and a runnable training+evaluation script and weights. PARTIAL: any reproducible tmQM gap-prediction result on a disclosed split with its MAE and error analysis, or a documented negative result showing a named architecture fails to transfer across the metal rows. Metric: MAE of the HOMO-LUMO gap in eV over the held-out test set; the split must be stated exactly for comparability.
Background
tmQM is the reference open dataset for ML on transition-metal complexes. Source: Balcells & Skjelstad, 'tmQM Dataset - Quantum Geometries and Properties of 86,665 Transition Metal Complexes', J. Chem. Inf. Model. 60, 6135 (2020), DOI 10.1021/acs.jcim.0c01041; data openly at https://github.com/bbskjelstad/tmqm. The paper reports Gaussian-process/kernel baselines; a later graph-centric release and GNN baselines appear in Kneiding et al., 'Deep learning metal complex properties with natural quantum graphs' (tmQMg), Digital Discovery 2, 618 (2023). Because transition metals bring d-orbital, oxidation-state, and spin diversity absent from organic benchmarks, they stress-test model transferability. All geometries, labels, and a reproducible split protocol are public, making the gap-MAE target checkable on a single workstation.
References
| Ref | Source | Type |
|---|---|---|
| REF-01 | Balcells & Skjelstad, tmQM dataset (2020) | link |
| REF-02 | tmQM data (GitHub) | link |
| REF-03 | Kneiding et al., tmQMg graph dataset + GNN baselines (2023) | link |
Investigations · 0
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